Culture, Fungus
ID: LAB6222
Last Review: 01/28/2026

Components
Culture Fungus
KOH Preparation
 

Specimen Sources
Abdominal
Abscess
Amniotic Fluid
Aqueous Fluid
Ascites
Aspirate
BAL
Bile
Biopsy
Body Fluid
Bone
Bone Marrow
Bronchial Brush
Bronchial Bx
Bronchial Wash
Bursa
Cerebrospinal Fluid
Conjunctiva
Corneal Rim
CSF Shunt Fluid
Cyst
Donor, Bronchus
Drainage
Duodenal Biopsy
Ear
Ear, Left
Ear, Right
Esophageal Brush
ETS/ETA
EXUDATE
Eye
Eye, Left
Eye, Right
Finger
Finger, Left
Finger, Right
Fistula
Gallbladder
Graft
Hand
Hand, Left
Hand, Right
Heart
Hip
Joint Fluid
Joint, Elbow
Joint, Finger
Joint, Knee
Joint, Left Elbow
Joint, Left Finger
Joint, Left Hip
Joint, Left Knee
Joint, Left Shoulder
Joint, Left Wrist
Joint, Loose Body
Joint, Other
Joint, Right Elbow
Joint, Right Finger
Joint, Right Hip
Joint, Right Knee
Joint, Right Shoulder
Joint, Right Wrist
Joint, Shoulder
Joint, Wrist
Lesion
Lung
Lymph Node
Lymphocele
Middle Ear Fluid
Mini-BAL
Misc Source
Node
Other
Pancreas
Paracentesis Fluid
Pelvic
PERICARDIAL FLUID
Peritoneal Fluid
Pleural Fluid
Pleural, Left
Pleural, Right
Pus
Recipient, Bronchus
Shunt
Sinus
Skin Biopsy
Skin Scraping
Skin, Cyst/Tag/Debridement
Skin, Other
Skin, Plastic Repair
Sputum
Sputum Induced
Synovial Fluid
Thoracentesis Fluid
Tissue
Toe
Toe, Left
Toe, Right
Tracheal Aspirate
Ulcer
VBAL
Vitreous Fluid
Wound

Turn Around Time (TATs for Specific Labs Below May Differ)
Turn Around Time:
  • ASAP: 28 Day(s)
  • STAT: 28 Day(s)
  • ROUTINE: 28 Day(s)

Performing Labs, Collection Containers and TATs
  Duke Microbiology Laboratory

Clinical Indications
Used to aid in the diagnosis of fungal infections.

Clinical Significance
Out of the large number and variety of fungi in our environment, only a small number have the innate ability to invade and cause human disease.  The fungi that are able to cause disease seem to do so because of some peculiar trait of metabolism not shared by taxonomically similar species.  The survival and growth at elevated body temperature, in reduced oxidation-reduction environment of tissue, and the ability to overcome host defense mechanisms set apart a few species.

The advent of cytotoxic drugs, long-term steroid treatment, organ transplant, and immunosuppressive agents has markedly increased the number and severity of diseases caused by the ever growing list of opportunistic fungi. For this reason, many fungi are of potential significance and should be scrutinized with respect to the patient's condition and underlying disease on an individual basis.  Communication between the physician and the Mycology Section is crucial for the proper evaluation of an isolate.

The incidence of serious candidiasis has risen sharply and often follows use of broad-spectrum antibiotics, steroids, and other immunosuppressive drugs.  As a group Candida spp. is one of the most frequent opportunistic pathogens in patients with Acquired Immunodeficiency Syndrome (AIDS) and in other patients with immune defects. 

Culture of bronchial, ETS, or sputum specimen is not conclusive for opportunistic infections (Aspergillus, Candida, and zygomycetes.) Lung biopsy for histopathology and culture are recommended. 

CSF fluid is screened for cell count (<=5 WBC/cubic mm, newborns <20 WBC/cubic mm). A normal CSF will not be cultured except from immunocompromised patients.

Culture of bone marrow is recommended by many authorities for diagnosis of systemic histoplasmosis and other fungus infections.

Susceptibility testing (Minimal Inhibitory Concentration Methodology) may be useful in serious fungal infections due to organisms with unpredictable susceptibility profiles, especially if standard regimens are inapplicable or have proven ineffective.  Testing is available at additional charge(s) for Candida, or Cryptococcus neoformans to amphotericin B, fluconazole, micafungin, caspofungin, and voriconazole.  Testing is not available for molds (e.g., Aspergillus, Rhizopus).  Susceptibility results are reported in mcg/mL.  The interpretative category ("susceptible", "intermediate", "susceptible dependent on dose," or "resistant") is included, if established for the yeast species/antifungal agent tested. Testing requires 3-5 days to complete.  Consultation with the Infectious Diseases Service is required prior to testing.

Communication with Clinical Microbiology is recommended when infection with Histoplasma, Blastomyces, or Coccidioides is suspected.

KOH-Calcofluor-White Preparation is reported with culture results.

Methodology
Fungal Culture.

Includes identification of fungi for an additional charge. 

Includes KOH-Calcofluor-White Preparation on all tissues, abscesses, eye, and sinuses, and on other specimens from immunocompromised patients at additional charge.

Includes Cryptococcal Antigen on CSF specimens that meet culture criteria at additional charges. 

CPT coding cannot be determined before culture is completed.

Additional Information
Order CULTURE, FUNGUS, DERMATOPHYTES for skin scraping, hair, or nail specimens. Order KOH PREPARATION, SKIN, HAIR, NAIL if needed.

Critical Values
No Critical Values